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PhD thesis, PhD thesis, Zurich University (1991) 9. : The sequence ontology: a tool for the unification of genome annotations. Genome. Biology 6(5) (2005) 10. : Evolution of the sequence ontology terms and relationships. In: Proceedings of the First International Conference on Biomedical Ontology (2009) 11. : Phenotype ontologies: the bridge between genomics and evolution. Trends. Ecol. Evol. (April 2007) 12. : Cross-product extensions of the gene ontology. In: Proceedings of the First International Conference on Biomedical Ontology (2009) 13.

In: Proceedings of Spring Conference of the Acoustical Society of America, pp. 547–550 (1979) 41. : Probabilistic Reasoning in Intelligent Systems. Morgan Kaufmann, San Francisco (1988) 42. : Inside-Outside probability computation for belief propagation. In: Proceedings of the 20th International Joint Conference on Artificial Intelligence (IJCAI 2007), pp. 2605–2610 (2007) Generative Modeling by PRISM 35 43. : Variational bayes via propositionalized probability computation in prism. Annals of Mathematics and Artificial Intelligence (to appear) 44.

Probabilistic grammars such as HMMs and PCFGs that define finite stochastic processes but whose length is unbounded are formally captured by PRISM programs with the distribution semantics. Thanks to the rigor of the distribution semantics, it is even possible to write a PRISM program defining prefix probabilities for a given PCFG, though their computation requires an infinite sum and cannot be handled by the current PRISM system6 [31]. – The distribution semantics is parameterized with a non-probabilistic semantics M used to extend the base measure PF (·).

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